]> Pathways and Gene annotations for QTL Phenotype This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.

2007-10-03T18:36:02Z 2007-10-03T18:36:02Z pathways_and_gene_annotations_for_qtl_phenotype_25941.xml

Taverna 1 2009-05-21T10:32:57Z 2010-04-23T12:56:44Z <p>Taverna is an open source family of tools for designing and executing workflows, created by the myGrid project and funded by OMII UK, the EPSRC, BBRC, ESRC, JISC and Microsoft.</p><p>The family consists of the Taverna Engine (the workhorse), and the Taverna Workbench (desktop client) and Taverna Server (remote workflow execution server) that sit on top of the Engine. See <a href="http://www.taverna.org.uk/">http://www.taverna.org.uk/</a> for further information.</p><p>The Taverna 1 Workbench is an earlier version of the workbench which is still available for download. Taverna 1 workflow descriptions are produced and consumed by this version of the workbench. They are in an XML format also known as SCUFL.</p><p>Note that the latest version of the workbench is Taverna 2 and is the recommended version. Most Taverna 1 workflows can also be read using the Taverna 2 workbench.</p><p>Users of the Taverna 1 workbench can access myExperiment from the workbench using a ???plugin??? which can be downloaded within the workbench. The plugin allows users to browse, download and open workflows from myExperiment within Taverna.</p> application/vnd.taverna.scufl+xml Pathways and Gene annotations for QTL region <p>This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.</p> <p>Example input:</p> <p>chromosome_name: 17</p> <p>start_position: 28500000</p> <p>end_position: 32500000</p>

2009-11-19T18:18:52Z 2009-11-20T10:33:25Z pathways_and_gene_annotations_forqtl_region_740037.xml

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2007-07-26T16:46:52Z 2010-05-17T12:09:48Z Paul Fisher Manchester United Kingdom

2010-05-17T12:09:48Z

2007-07-26T16:46:52Z

b12cc60cb3a80731a118fdca7535d7cd9e0f09f8 Bioinformatics Workflows QTL analysis Microarrays Biological pathway analysis In silico automation Protein 3D structure prediction Disease gene identification

by-sa Creative Commons Attribution-Share Alike 3.0 Unported License <h4>You are free:</h4> <ul> <li>to Share — to copy, distribute and transmit the work</li> <li>to Remix — to adapt the work</li> </ul> <h4>Under the following conditions:</h4> <ul> <li>Attribution — You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work).</li> <li>Share Alike — If you alter, transform, or build upon this work, you may distribute the resulting work only under the same, similar or a compatible license.</li> </ul> <h4>With the understanding that:</h4> <ul> <li>Waiver — Any of the above conditions can be waived if you get permission from the copyright holder.</li> <li>Other Rights — In no way are any of the following rights affected by the license: <ul> <li>Your fair dealing or fair use rights;</li> <li>The author's moral rights;</li> <li>Rights other persons may have either in the work itself or in how the work is used, such as publicity or privacy rights.</li> </ul> </li> <li>Notice — For any reuse or distribution, you must make clear to others the license terms of this work. The best way to do this is with a link to <a href='http://creativecommons.org/licenses/by-sa/3.0/'>http://creativecommons.org/licenses/by-sa/3.0/</a>.</li> </ul> 2009-07-08T14:09:36Z 2009-07-08T14:09:37Z

Pathways and Gene annotations for QTL Phenotype This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.

2007-10-03T18:36:02Z 2007-10-03T18:36:02Z pathways_and_gene_annotations_for_qtl_phenotype_25941.xml